Reference Manager

Manage papers from PubMed

Overview

References management software is software for scholars and authors to use for recording and utilizing bibliographic citations (references) as well as managing project references either as a company or an individual.

Many widgets have been developed to utilize PubMed APIs.

Category

Widget

Type

Description

PubMed

PMID

Column

Store PMID and sync other fields with PubMed

PubMed

PubMed Abstract

Section

Display the abstract of a PMID

PubMed

PubMed Citation

Section

Display summary of PMIDs

PubMed

PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics. The United States National Library of Medicine at the National Institutes of Health maintains the database as part of the Entrez system of information retrieval.

While servicing to document the new scientific data, Labii ELN & LIMS can also help you manage the published papers from PubMed.

PMID

PMID is a Column type widget to store PubMed id and sync other fields with PubMed.

PMID have to work with other fields, here are the fields that needed:

Column

Widget

Description

PMID

PMID

PubMed id

journal

Text

Journal title

volume

Number

Journal volume

issue

Number

Journal issue

pages

Text

Journal pages

authors

Text

The authors

pubdate

Text

Published date

pmc

Text

PMC id

doi

Text

DOI

full_text_link

Text

Link of full text

Note: The name of PMID have to be named as PMID.

Sync column data

The value of the above fields can be updated directly. To do that, 1) update the value of PMID, 2) click the sync icon next to the PMID.

PMID Widget

Note: Error message will be generated if the PMID is not correct.

The title of paper will be updated in the name field, no additional settings needed.

For all other columns, if the column is added in the table settings, the field will be updated, otherwise, it will be ignored.

Other fields of the PMID

PubMed Abstract

PubMed Abstract is a section widget to display the abstract of a paper. It will first check whether the abstract is downloaded, if not, the widget will download the save the abstract in the database automatically.

Requirement:

This widget reply on the PMID widget to query the abstract. If the field is missing, an error message will be provided.

PubMed Abstract

Click "Update Abstract" to get a new version of the abstract.

PubMed Citation

PubMed Citation is a section widget to display summary for multiple PMIDs. It can be inserted into any experiments or protocols, and it does not reply on PMID widget.

To add a list of PMIDs, click the edit icon and paste a list of PMIDs separated by "," or one PMID per line.

Edit PubMed Citation

Once submitted, the summary will be displayed:

PubMed Citation

To-do

There are more PubMed related widgets we are going to develop. Please contacts help@labii.com to provide your suggestions.

  • Request full text

  • PubMed Summary

  • PubMed Full Text