LIMS for NGS
Streamline the sequencing process and enable efficient management and tracking of details from DNA/RNA extraction to library preparation and Fastq file generation.
Overview
Labii LIMS for NGS is a powerful tool for managing and tracking NGS workflows. It simplifies the sequencing process by offering an intuitive interface and automated tracking capabilities. With this application, users can easily manage and monitor various stages of the NGS workflow, ensuring accurate and efficient execution of experiments.
Labii LIMS for NGS allows users to store and organize information related to hosts, samples, experiments, protocols, storage, and consumption. The application is designed to eliminate the manual and error-prone aspects of NGS workflows, enabling researchers to focus on their experiments and data analysis.
Requirements
To install Labii LIMS for NGS, please follow the steps below:
Go to the "Settings" menu and select "Applications."
Click on "Add application" and choose "Add from a template."
Look for "LIMS for NGS" in the template options. If you do not see it, it means that the application is already installed.
Additionally, it is recommended to install the "Equipment Management" application along with Labii LIMS for NGS. This allows for better association of equipment usage with the sequencing process.
Design
Labii LIMS for NGS is designed with multiple tables to capture and store relevant information. Here are the main tables used in the application:
Host Table: Stores information about hosts used in the NGS workflow.
NGS Material Table: Stores samples from biospecimens, extracts, libraries, and Fastq files. The "type" column helps differentiate the sample types.
NGS Experiment Table: Captures the sequencing experiment workflow and stores all associated data and processes.
Protocol Table: Stores sequencing Standard Operating Procedures (SOPs).
Storage Table: Manages information related to sample storage.
Consumption Table: Tracks sample usage.
Each table consists of specific columns and sections to capture relevant information related to the NGS workflow.
General Usage
Labii LIMS for NGS provides a user-friendly interface to perform various tasks in the NGS workflow. Here are the general usage instructions:
Creating New Records: Users can create new records by following the specific workflows available in the application. For example, to add biospecimen, the "Scan" feature can be used.
Managing Records in Table List View: All records can be accessed and managed in the table list view. Users can filter, sort, and perform batch actions on the records.
Viewing Record Details: Clicking on a record in the table list view opens the record details, which displays all associated information and allows for further editing if required.
Sample Receiving and Accessioning
Labii LIMS introduces a robust Sample Receiving and Accessioning feature, streamlining the management of sample intake and accessioning processes. Users can refer to the comprehensive "Sample Management" documentation for detailed instructions, ensuring efficient handling of samples from reception to accession.
NGS Flowchart
Labii Process Integration in Labii LIMS for NGS is a powerful tool designed to streamline the intricate sequencing workflow by transforming it into visualized flowcharts. This feature enhances the overall efficiency and clarity of the NGS experiment process. Labii LIMS leverages process integration to automate and connect various steps of the sequencing workflow seamlessly. Through visual flowcharts, researchers and technicians gain a comprehensive and intuitive overview of the entire process, making it easier to track, monitor, and manage each stage. Labii Process Integration not only reduces the complexity of the sequencing workflow but also enhances collaboration and communication by providing a clear and accessible representation of the experiment's progression. This innovative approach simplifies the management of NGS experiments, allowing users to focus more on research and less on the intricacies of manual tracking and coordination.
Automatic workflow for material consumption
Documenting the usage of biospecimen, extract, and library in Labii LIMS for NGS has been made remarkably simple – just a single click initiates the entire process. By clicking the "Execute Workflow" button within the biospecimen, extract, and libraries sections, users can seamlessly document and progress through each stage of the NGS workflow. This one-click functionality not only streamlines the documentation process but also ensures accuracy and consistency in recording critical information. Labii LIMS simplifies the complexities associated with biospecimen, extract, and library management, empowering researchers with a user-friendly solution that minimizes manual efforts and reduces the risk of errors. With this straightforward approach, Labii LIMS enhances the overall efficiency of NGS experiments, allowing scientists to focus more on their research and less on administrative intricacies.
Automatic workflow for creation of materials
Labii LIMS for NGS brings unparalleled simplicity to the generation of materials such as extract, library, and Fastq records through a streamlined workflow that requires just a simple click. This innovative feature allows users to effortlessly execute the entire process with precision and efficiency. By clicking a single button, researchers can initiate the workflow for generating extract, library, and Fastq records, automating what can otherwise be a complex and time-consuming task. Labii LIMS optimizes the sequencing workflow, ensuring that the generation of materials is not only straightforward but also error-free. This one-click functionality not only enhances the user experience but also significantly accelerates the pace of research by reducing manual efforts and expediting the production of crucial materials in NGS experiments. With Labii LIMS, researchers can navigate the complexities of material generation effortlessly, dedicating more time to scientific inquiry and less to administrative tasks.
Conclusion
Labii LIMS for NGS is a comprehensive solution for managing and tracking NGS workflows. With its intuitive interface, automation features, and robust data organization capabilities, researchers can save time and effort, ensuring accurate and efficient execution of NGS experiments. By simplifying the sequencing process, Labii LIMS for NGS empowers researchers to focus on their scientific endeavors and data analysis.
Last updated
